variant call format (vcf) files (Illumina Inc)

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Illumina Inc variant call format (vcf) files
Variant Call Format (Vcf) Files, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/vcf+files/na12878/pm40413309-80-0-11
Average 90 stars, based on 1 article reviews

variant call format (vcf) files - by Bioz Stars, 2026-10

90/100 stars

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Article Title: AIVariant: a deep learning-based somatic variant detector for highly contaminated tumor samples
Article Snippet: .. For the CHM1/CHM13 WGS data, we downloaded relevant VCF files that included two germline SNV lists for WGS data generated by Illumina and Pacific Bioscience (PacBio) sequencers ( https://github.com/lh3/CHM-eval/release ). ..

Article Title: Benchmarking of variant calling software for whole-exome sequencing using gold standard datasets.
Article Snippet: .. Although Illumina does not offer its own tools for tertiary analysis, VCF files generated by Illumina can be used with other software that provide tertiary analysis, such as Varsome, and Qiagen’s Clinical Insights (https://digitalinsights.qiagen.com). ..

Article Title: Benchmarking of variant calling software for whole-exome sequencing using gold standard datasets
Article Snippet: .. Although Illumina does not offer its own tools for tertiary analysis, VCF files generated by Illumina can be used with other software that provide tertiary analysis, such as Varsome, and Qiagen’s Clinical Insights ( https://digitalinsights.qiagen.com ). ..

Article Title: AIVariant: a deep learning-based somatic variant detector for highly contaminated tumor samples.
Article Snippet: .. For the CHM1/CHM13 WGS data, we downloaded relevant VCF files that included two germline SNV lists for WGS data generated by Illumina and Pacific Bioscience (PacBio) sequencers (https://github.com/lh3/CHM-eval/release). ..

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Article Title: Recurrent switch 2 domain RAC2 mutations in intravascular large B-cell lymphoma
Article Snippet: .. Hard filtered VCF files obtained from Illumina DRAGEN pipeline were annotated using Annovar Selection of candidate somatic mutations: Following criteria were used to exclude variants from analysis 1) Failed to pass the default hard filter from Illumina DNA DRAGEN pipeline 2) If the total allelic depth is less than 8. ..

other:

Article Title: A Toolkit for bulk PCR-based marker design from next-generation sequence data: application for development of a framework linkage map in bulb onion ( Allium cepa L.)
Article Snippet: Workflows for using these tools to design CAPS markers from Illumina (vcf files) or Roche 454 data (gsMapper 454HCDiffs.txt files) are provided in the Galaxy Toolshed repository and are described in on-line documentation at GitHub ( https://github.com/cfljam/galaxy-pcr-markers/wiki ).

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